Package index
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classify() - Classify DAPI
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class.neighbours() - Class neighbourhood distribution
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colors.in.classes() - Compute colors in classes distribution
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compute.distance2border() - Compute distance to border of classes
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dapimask() - Mask DAPI in kernel
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splitchannel() - Split RGB channels
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spots.combined() - Find spots using information from two channels
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classify.folder() - Classify DAPI
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class.neighbours.folder() - class.neighbours.folder
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colors.in.classes.folder() - Compute colors in classes distribution for folders
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dapimask.folder() - Automatic DAPI mask segmentation for folder
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find.spots.folder() - Detects spots
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nearestClassDistances.folder() - Find all distances to next neighbour of all classes for folders
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plot_classify.folder() - Plot barplot for classified images in a folder
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plot_colors.in.classes.folder() - Plot for colors in classes distribution for folders
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plot_nearestClassDistances.folder() - Plots all distances to next neighbour of all classes for folders
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splitchannels.folder() - Split RGB images into channels and pixel size information
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spots.combined.folder() - Find spots using information from two channels for folder
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t_colors.in.classes.folder() - Test for colors in classes distribution for folders
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barplot_with_interval_23() - Barplot with Intervals for two or three bars beside
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barplot_with_interval() - Barplot with Intervals
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heatmap.color() - Heatmap colors for n classes
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plot_classify.folder() - Plot barplot for classified images in a folder
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plot_colors.in.classes.folder() - Plot for colors in classes distribution for folders
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plot_nearestClassDistances.folder() - Plots all distances to next neighbour of all classes for folders
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dapimask.file() - Automatic DAPI mask segmentation for files
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find.spots.file() - Detects spots for one file
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splitchannels.file() - Split channels into files and extracts size in microns
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spots.combined.file() - Find spots using information from two channels
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classify.single() - Classify DAPI
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classify.table() - Count classes in classified image
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heatmap7() - Heatmap colors for 7 classes
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splitchannels() - Split RGB images into channels and pixel size information