Main functions

Classify DAPI

Class neighbourhood distribution

Compute colors in classes distribution

Compute distance to border of classes

Mask DAPI in kernel

Split RGB channels

Find spots using information from two channels

Functions on folders

Classify DAPI

class.neighbours.folder

Compute colors in classes distribution for folders

Automatic DAPI mask segmentation for folder

Detects spots

Find all distances to next neighbour of all classes for folders

Plot barplot for classified images in a folder

Plot for colors in classes distribution for folders

Plots all distances to next neighbour of all classes for folders

Split RGB images into channels and pixel size information

Find spots using information from two channels for folder

Test for colors in classes distribution for folders

Plotting

Barplot with Intervals for two or three bars beside

Barplot with Intervals

Heatmap colors for n classes

Plot barplot for classified images in a folder

Plot for colors in classes distribution for folders

Plots all distances to next neighbour of all classes for folders

Functions on files

Automatic DAPI mask segmentation for files

Detects spotsfor one file

Split channels into files and extracts size in microns

Find spots using information from two channels

Deprectated

Classify DAPI

Count classes in classified image

Heatmap colors for 7 classes

Split RGB images into channels and pixel size information