Detects spots — find.spots.folder • nucim

Detects spots

find.spots.folder(
  f,
  color,
  thresh = 1,
  thresh.auto = TRUE,
  filter = NULL,
  cores = 1
)

Arguments

f: path to folder
color: which color, images have to be in folder with color name
thresh: threshold
thresh.auto: Logical. Find threshold automatically?
filter: 2d-filter to use before spot detection
cores: number of cores to use in parallel (with parallel package only)

Value

spot images in spot-color/, number of spots as txt files in spot-color/