Usage
find.spots.folder(
f,
color,
thresh = 1,
thresh.auto = TRUE,
filter = NULL,
cores = 1
)
Arguments
- f
path to folder
- color
which color, images have to be in folder with color name
- thresh
threshold
- thresh.auto
Logical. Find threshold automatically?
- filter
2d-filter to use before spot detection
- cores
number of cores to use in parallel (with parallel package only)
Value
spot images in spot-color/, number of spots as txt files in spot-color/