Automatic DAPI mask segmentation for folder

Source: R/dapimask_folder.R

Automatic DAPI mask segmentation for folder

dapimask.folder(
  path,
  folder = "blue",
  voxelsize = NULL,
  size = NULL,
  cores = 1
)

Arguments

path

path to folder with DAPI

folder

folder with DAPI images

voxelsize

real size of voxel (in microns), if NULL (default), look in folder XYZmic

size

real size of image (in microns), if NULL (default), look in folder XYZmic

cores

number of cores to use in parallel (need parallel package)

Value

nothing, results are in folder dapimask