nucim (Nucleome Imaging Toolbox) is an R package for quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy.

## Installation

The stable version is available on CRAN:

setRepositories(ind=c(1,2))
install.packages(c("nucim"))

Installation will take about 5 to 10 seconds. Tested platforms can be found here.

The development version is available on github. The development version probably depends on the development version of bioimagetools:

setRepositories(ind=c(1,2))
install.packages(c("devtools","tiff","EBImage"))
devtools::install_github("bioimaginggroup/bioimagetools")
devtools::install_github("bioimaginggroup/nucim")

You may need to install additional libraries on your OS before you can install nucim. E.g. on Ubuntu/Debian systems, please execute:

sudo apt install libssl-dev libcurl4-openssl-dev libtiff5-dev libfftw3-dev

in the terminal before installing nucim.